This zip file includes the simulations used for recombination.

Included (for each of the 6 parameter sets) described in "A Comparison of Phylogenetic Network Methods Using Computer Simulation" is a folder with a nexus file format with the simulated sequences, and a directory with the trees on which the sequences were simulated.

The folders are named 7-12, which correspond to sets 13-18 in the paper.

The trees are in newick format. They are included in a single file per simulation (e.g. trees0.txt)
also some may contain a set of files with one tree per file (e.g. trees0.txt_*]) which can be easily generated using the unix "split" command.

Please contact me if you need more info/data.