Washington University Department of Biology

Faculty Publications - Calendar Year 2001

  1. Allen, G. 2001. Is a new eugenics afoot? Science 294: 59-61.
  2. Allen, G., and J. J. W. Baker. 2001. Biology:  Scientific Process and Social Issues. Fitzgerald Scientific Press, Bethesda.
  3. Angert, A. L., D. Hutchison, D. Glossip, and J. B. Losos. 2001. Microhabitat use and thermal biologyof the collared lizard (Crotaphytus collaris collaris) and the fence lizard (Scheloporus undulatus hyacinthinus) in Missouri glades. J Herpatol 36: 23-29.
  4. Aujard, F., E. D. Herzog, and G. D. Block. 2001. Aging alters circadian rhythmicity of individual suprachiasmatic nucleus neurons in mice. Neuroscience 106: 255-261.
  5. Brown, P. K., C. M. Dozois, C. A. Nickerson, A. Zuppardo, J. Terlonge, and R. Curtiss III. 2001. MlrA a novel regulator of curli (Agf) synthesis and aggregation by Escherichia coli and Salmonella enterica serovar Typhimurium. Mol Microbiol 41: 349-363.
  6. Campell, J. L., N. Klueva, H. Zheng, J. Nieto-Sotelo, T.-H. D. Ho, and H. T. Nguyen. 2001. Heat shock protein HSP101 gene facmily in wheat (Triticum aestivum (L.) Moench) is induced by heat, dehydration and ABA. Biochem Biophys Acta 1517: 270-277.
  7. Carvalho, L. J. C. B., and B. A. Schaal. 2001. Assessing genetic diversity in the cassava (Manihot esculenta Crantz) germplasm collection in Brazil using PCR-based markers. Euphytica 120: 133-142.
  8. Chalker, D. L., and M.-C. Yao. 2001. Non-genic, bi-directional transcription precedes and may promote developmental DNA deletion in Tetrahymena thermophila. Genes Dev 15: 1287-1298.
  9. Chase, J. M., W. Wilson, and S. Richards. 2001. Foraging trade-offs and resource patchiness: Theory and experiments with a freshwater snail community. Ecol 4: 304-312.
  10. Collin-Osdoby, P., F. Anderson, and P. Osdoby. 2001. Primary isolation and culture of chicken osteoclasts in M. H. S. Ralston, ed. Methods in Molecular Medicine: Bone Research Protocols. Humana Press, Totowa, NJ.
  11. Collin-Osdoby, P., L. Rothe, F. Anderson, M. Nelson, W. Maloney, and P. Osdoby. 2001. Receptor activator of NF-kB and osteoprotegerin expression by human microvascular endothelial cells. Regulation by inflammatory cytokines, and role in human osteoclastogenesis. J Biol Chem 276: 20659-20672.
  12. Creer, D. A., K. de Queiroz, T. R. Jackman, J. B. Losos, and A. Larson. 2001. Systematics of the Anolis roquet series of the southern Lesser Antilles. J Herpetol 35: 428-441.
  13. Curtiss III, R. 2001. Vaccines and vaccine technology to prevent typhoid and Salmonella diarrheal diseases. Pages 1-24. Typhoid Fever and other Salmonellosis (Proceedings of the 4th International Symposium). Jeou-Chou Book Co., LTD, Taipei, Taiwan, ROC.
  14. Curtiss III, R., S. Blower, K. Cooper, D. Russell, S. Silverstein, and L. Young. 2001. Leprosy research in the post-genome era. Lepr Rev 72: 8-22.
  15. Daigle, F., J. E. Graham, and R. Curtiss III. 2001. Identification of Salmonella typhi genes expressed within macrophages by selective capture of transcribed sequences (SCOTS).  Mol Microbiol 41: 1211-1222.

 

 

  1. Eissenberg, J. C., S. C. R. Elgin, and R. Paro. 2001. Epigenetic regulation in Drosophila:  unraveling the conspiracy of silence in S. C. R. Elgin and J. L. Workman, eds. Chromatin Structure and Gene Expression. Oxford University Press, New York.
  2. Ferris, P. J., J. P. Woessner, S. Waffenschmidt, S. Kilz, J. Drees, and U. W. Goodenough. 2001. Glycosylated polyproline II rods with kinks as a structural motif in plant hydroxyproline-rich glycoproteins. Biochemistry 40: 2978-2987.
  3. Frey, S. E., W. Bollen, D. Sizemore, M. Campbell, and R. Curtiss III. 2001. Bacteremia associated with live attenuated c8110 Salmonella enterica serovar Typhi ISP1820 in healthy adult volunteers. Clin Immunol 101: 32-37.
  4. Glor, R. E., L. J. Vitt, and A. Larson. 2001. A molecular phylogenetic analysis of diversification in Amazonian Anolis lizards. Mol Ecol 10: 2661.
  5. Goldman, B. S., and R. G. Kranz. 2001. ABC transporters associated with cytochrome c biogenesis. Res Microbiol 152: 323-329.
  6. Gomez-Cadenas, A., R. Zentella, T. D. Sutliff, and T.-H. D. Ho. 2001. Involvement of multiple cis-elements in the regulation of GA responsive promoters: Definition of a new cis-element in the Amy32b gene promoter of barley (Hordeum vulgare, L.). Physiol Plant 112: 211-216.
  7. Gomez-Cadenas, A., R. Zentella, M. K. Walker-Simmons, and T.-H. D. Ho. 2001. Gibberellin/abscisic acid antagoinism: Site of action of an abscisic acid induced protein kinase, PKABA1, in relation to gibberellin signaling molecules. Plant Cell 13: 667-679.
  8. Goodenough, U. W. 2001. Genomes, Gould, and Emergence. Zygon 36: 383-393.
  9. Goodenough, U. W.  2001. A setback to the dialogue:  Response to Huston Smith. Zygon 36: 201-206.
  10. Goodenough, U. W.  2001. Vertical and horizontal transcendence. Zygon 36: 21-31.
  11. Goodenough, U. W., and P. Woodruff. 2001. Mindful virtue, mindful reverence. Zygon 36: 585-595.
  12. Granok, H., B. A. Leibovitch, and S. C. R. Elgin. 2001. A heat shock-activated cDNA encoding GAGA factor rescues some lethal mutations in Drosophila melanogaster Trithorax-likegene. Genet Res Camb 78: 13-21.
  13. Hayworth, D., M. Bowles, B. Schaal, and K. Williams. 2001. Clonal population structure of the federal threatened Mead's milkweed, as determined by RAPD analysis and its conservation implications. Pages 182-190. Proceedings of the 17th North American Prairie Conference.
  14. Herzog, E. D., and G. Tosini. 2001. The mammalian circadian clock shop (invited review). Semin Cell Dev Biol 12: 295-303.
  15. Hickman, C. P., Jr., L. S. Roberts, and A. Larson. 2001. Integrated Principles of Zoology. McGraw-Hill, Boston.
  16. Horton, A., and J. J. Gibson-Brown. 2001. Evolution of developmental functions by the Ecomesodermin, T-brain-1, Tbx21 subfamily of T-box  genes: Insights from amphioxus. J Exp Zool (Mol Dev Evol) 294: 112-121.
  17. Huang, S., Y. Chiang, B. Schaal, C. Chou, and T. Chiang. 2001. Organelle DNA phylogeography of Cycas taitungensis. Mol Ecol 10: 2669-2682.

 

 

  1. Inagaki, N., R. Maitra, K. Satoh, and H. B. Pakrasi. 2001. Amino acid residues that are critical for in vivo catalytic activity of CtpA, the carboxyl-terminal processing protease for the D1 Protein of Photosystem II. J Biol Chem 276: 30099-30105.
  2. Ji, W., E. Gao, and N. Suga. 2001. Effects of acetylcholine and atropine on plasticity of central auditory neurons caused by conditioning in bats. J Neurophysiol 86: 211-225.
  3. Kloek, A. P., M. L. Verbsky, S. B. Sharma, J. E. Schoelz, J. Vogel, D. F. Klessig, and B. N. Kunkel. 2001. Resistance to Pseudomonas syringae conferred by an Arabidopsis thaliana coronatine insensitive (coi1) mutation occurs through two distinct mechanisms. Plant J 26: 509-522.
  4. Knox, A. K., J. B. Losos, and C. J. Schneider. 2001. Adaptive radiation versus intraspecific differentiation: morphological variation in Carribean Anolis lizards. J Evol Biol 14: 904-909.
  5. Kohl, D. H. 2001. GM Food - Another view. The Nation 16: 7.
  6. Kramer, M. G., and A. R. Templeton. 2001. Life-history changes that accompany the transition from sexual to parthenogenetic reproduction in Drosophila mercatorum. Evolution 55: 748-761.
  7. Larson, A. 2001. Book Review - Utopia's Garden: French Natural History from Old Regime to Revolution, by Emma C. Spary. Hist Phil Life Sci 23: 136-137.
  8. Levin, P. A., R. L. Schwartz, and A. D. Grossman. 2001. Polymer stability plays an important role in the positional regulation of FtsZ. J Bacteriol 183: 5449-5452.
  9. Lewis, M. S., and C. S. Pikaard. 2001. Restricted chromosomal silencing in nucleolar dominance. Proc Natl Acad Sci 98: 14536-14540.
  10. Losos, J. B., T. W. Schoener, K. I. Warheit, and D. A. Creer. 2001. Experimental studies of adaptive differentiation in Bahamian Anolis lizards.  Genetica 112-113: 399-415 (reprinted). Pages 399-415 in A. P. Hendry and M. T. Kinnison, eds. Microevolution: Rate, pattern, and process. Kluwer Academic Publishers, Dordrecht.
  11. Ma, X., and N. Suga. 2001. Corticofugal modulation of duration-tuned neurons in the midbrain auditory nucleus in bats. Proc Natl Acad Sci 98: 14060-14065.
  12. Ma, X., and N. Suga. 2001. Plasticity of bat's central auditory system evoked by focal electric stimulation of auditory and/or somatosensory cortices. J Neurophysiol 85: 1078-1087.
  13. Macey, J. R., J. Strasburg, J. Brisson, V. Vredenburg, M. Jennings, and A. Larson. 2001. Molecular phylogenetics of western North American frogs of the Rana boylii species group. Mol Phylogen Evol 19: 131-143.
  14. Masepohl, B., B. Kaiser, N. Isakovic, C. L. Richard, R. G. Kranz, and W. Klipp. 2001. Urea utilization in the phototrophic bacterium Rhodobacter capsulatus is regulated by the transcriptional activator NtrC. J Bacteriol 183: 637-643.
  15. Melville, J., J. A. Schulte, II, and A. Larson. 2001. A molecular phylogenetic study of ecological diversification in the Australian lizard genus Ctenophorus. J Exp Zool 291: 339-353.
  16. Misawa, H., and N. Suga. 2001. Multiple combination sensitive neurons in the auditory cortex of the mustached bat. Hear Res 151: 15-29.

 

 

  1. Ng, W.-O., and H. B. Pakrasi. 2001. DNA photolyase homologues are the major UV resistance factors in Synechocystis sp. PCC 6803. Mol Gen Genet 264: 924-930.
  2. Nunemaker, C. S., R. A. Defazio, M. E. Geusz, E. D. Herzog, G. R. Pitts, and S. M. Moenter. 2001. Long-term recordings of networks of immortalized gonadotropin-releasing hormone neurons reveal episodic patterns of electrical activity. J Neurophysiol 86: 86-93.
  3. Olsen, K. M., and B. A. Schaal. 2001. Microsatellite variation in Cassava (Manihot esculenta, Euphorbiaceae) and its wild relatives:  Further evidence for a southern Amazonia origin of domestication. Am J Bot 88: 131-142.
  4. Pakrasi, H. B., T. Ogawa, and M. Bhattacharyya-Pakrasi. 2001. Transport of metals:  A key process in oxygenic photosynthesis. Pages 253-264 in E.-M. Aro and B. A. Andersson, eds. Regulatory Aspects of Photosynthesis. Kluwer Academic Publ., Dordrecht.
  5. Pikaard, C. S. 2001. The epigenetics of nucleolar dominance. Trends Genet 16: 495-500.
  6. Pikaard, C. S. 2001. Genomic change and gene silencing in polyploids. Trends Genet 17: 675-677.
  7. Quatrano, R. S. 2001. Plant genomics: Emerging tools. Pages 319. Society of Plant Biologists, Rockville, MD.
  8. Regel, R. E., N. B. Ivleva, H. Zer, J. Meurer, S. V. Shestakov, R. G. Herrmann, H. B. Pakrasi, and I. Ohad. 2001. Deregulation of electron flow within Photosystem II in the absence of the PsbJ protein. J Biol Chem 276: 41473-41478.
  9. Saez-Vasquez, J., M. Meissner, and C. S. Pikaard. 2001. RNA polymerase I holoenzyme-promoter DNA complexes include an associated CK2-like protein kinase. Plant Mol Biol 47: 449-460.
  10. Sakai, M., and N. Suga. 2001. Plasticity of the cochleotopic (frequency) map in specialized and nonspecialized auditory cortices. Proc Natl Acad Sci 98: 3507-3512.
  11. Schaal, B. A., and W. J. Leverich. 2001. Plant population biology and systematics. Taxon 50: 679-695.
  12. Schaechter, M., and R. C. I. The View From Here Group (J. Beckwith, W. Hatfield, J. Ingraham, K.B. Low, B. Magasanik, F. Neidhardt, W. Reznikoff, and M. Riley). 2001. Escherichia coli and Salmonella 2000: The view from here. Microbiol Mol Biol 65: 119-130.
  13. Schneider, C. J., J. B. Losos, and K. de Queiroz. 2001. Evolutionary relationships of Anolis bimaculatus group from the northern Lesser Antilles. J Herpetol 35: 1-12.
  14. Schoener, T. W., D. A. Spiller, and J. B. Losos. 2001. Natural restoration of the species-area relation for a lizard after a hurricane. Science 294: 1525-1528.
  15. Schoener, T. W., D. A. Spiller, and J. B. Losos. 2001. Predators increase the risk of catastrophic extinction of prey populations. Nature 412: 183-186.
  16. Shen, Q., C.-N. Chen, A. Brands, S.-M. Pan, and T.-H. D. Ho. 2001. A unique stress and abscisic acid induced barley gene, HVA22: developmental regulation and homologs in diverse organisms. Plant Mol Biol 45: 327-340.
  17. Shen, Q., A. Gomez-Cadenas, P. Zhang, M. K. Walker-Simmons, J. Sheen, and T.-H. D. Ho. 2001. Dissection of abscisic acid signal transduction pathways in barley aleurone layers. Plant Mol Biol 47: 437-448.
  18. Shen, W., A. Gomez-Cadenas, E. Routly, T.-H. D. Ho, J. Simmons, and P. Gulick. 2001. The salt-stress-inducible protein kinase gene, Esi47, from the salt-tolerant wheatgrass Lophopyrum elongatum is involved in plant hormone signaling. Plant Physiol 125: 1429-1441.
  19. Sheoran, A. S., J. F. Timoney, S. S. Tinge, P. Sundaram, and R. Curtiss, III. 2001. Intranasal immunogenicity of a cya crp-pabA mutant of Salmonella enterica serovar Typhimurium for the horse. Vaccine 19: 3591-3599.
  20. Stein, P. S. G., and S. Daniels-McQueen. 2001. Modular organization of turtle spinal interneurons during fictive rostral scratching. Soc Neurosci Abstr 27: 804.
  21. Suga, N., E. Gao, X. Ma, M. Sakai, and S. A. Chowdhury. 2001. Corticofugal system and processing of behaviorally relevant sounds:  Perspective (translation). Acoust Sci Tech 22: 85-91.
  22. Sun, F.-L., M. H. Cuaycong, and S. C. R. Elgin. 2001. Long-range nucleosome ordering is associated with gene silencing in Drosophila melanogaster pericentric heterochromatin. Mol Cell Biol 21: 2867-2879.
  23. Templeton, A. R. 2001. Evolution. World Book Encyclopedia.
  24. Templeton, A. R. 2001. Using phylogeographic analyses of gene trees to test species status and processes.  Mol Ecol 10: 779-791.
  25. Templeton, A. R., R. J. Robertson, J. Brisson, and J. Strasburg. 2001. Disrupting evolutionary processes: The effect of habitat fragmentation on collared lizards in the Missouri Ozarks. Proc Natl Acad Sci 98: 5426-5432.
  26. Umen, J. G., and U. W. Goodenough. 2001. Chloroplast DNA methylation and inheritance in Chlamydomonas. Genes Dev 15: 2585-2597.
  27. Umen, J. G., and U. W. Goodenough. 2001. Control of cell division by a retinoblastoma protein homolog in Chlamydomonas. Genes Dev 15: 1652-1661.
  28. Verbsky, M. L., and E. J. Richards. 2001. Chromatin remodeling in plants. Curr Opin Plant Biol 4: 494-500.
  29. Weisrock, D. W., J. R. Macey, I. H. Ugurtas, A. Larson, and T. J. Papenfuss. 2001.  Molecular phylogenetics and historical biogeography among salamandrids of the "true" salamander clade: Rapid branching of numerous highly divergent lineages in Mertensiella luschani associated with the rise of Anatolia. Mol Phylo Evol 18: 434-448.
  30. Yao, M. C., S. Duharcourt, and D. L. Chalker. 2001. Genome-wide rearrangements of DNA in Ciliates. Pages 730-758 in N. Craig, R. Craigie, M. Gellert, and A. Lambowitz, eds. Mobile DNA II. Academic Press, New York.
  31. Young, T. P., J. M. Chase, and R. T. Huddleston. 2001. Community succession and assembly: Comparing, contrasting, and combining paradigms in the context of ecological restoration. Ecol Rest 19: 5-18.
  32. Zak, E., B. Norling, R. Maitra, F. Huang, B. Andersson, and H. B. Pakrasi. 2001. The initial steps of biogenesis of cyanobacterial photosystems occur in plasma membranes. Proc Nat Acad Sci USA 98: 13443-13448.